WebSummary HTML file. Successful execution of FitHiChIP pipeline generates an HTML file Summary_results_FitHiChIP.html within the output directory OutDir specified in the configuration file. This file lists the output files containing significant interactions from the FitHiChIP pipeline, according to the given input parameters. WebNov 29, 2024 · Hic-pro的结果文件转化为.hic文件,在juicebox中实现可视化. hic数据经过Hic-pro处理后,会生成allvalidpairs文件,这是所有有效配对的文件。一般想要可视化的 …
[PDF] FitHiChIP: Identification of significant chromatin contacts …
WebHere we describe FitHiChIP (github.com/ay-lab/FitHiChIP), a computational method for identifying chromatin contacts among regulatory regions such as en-hancers and … WebDec 2, 2024 · All other default settings were used. The HiC-Pro pipeline selects only uniquely mapped valid read pairs involving two different restriction fragments to build the contact maps. We applied FitHiChIP version 5.1 52. Mapping loops to enhancers and promoters. For loop annotations, we first extended loop anchors by 5 kb on either side. crystal\u0027s ff
寒山梦绮 - 简书
WebThe purpose of this document is to provide a step-by-step walkthrough to plot significant interactions or “loops” generated through HiChIP data at regions of interests with minimal computational expertise, as seen in the figure below. This workflow assumes you have completed the previous steps From fastq to final valid pairs bam file ... WebFitHiChIP: Identification of significant chromatin contacts from HiChIP data. FitHiChIP is a computational method for identifying chromatin contacts among regulatory regions such … WebSep 10, 2024 · FitHiChIP jointly models the non-uniform coverage and genomic distance scaling of HiChIP data, captures previously validated enhancer interactions for several genes including MYC and TP53, and ... dynamic industries morwell